The facility will act as a warehouse and centralised customs clearance for Malaysia and the region, Alibaba said in a statement.
Officials refused to divulge investment figures, but an Alibaba spokeswoman said the facility would be operational at the end of 2019.
Ma, who in November became the Malaysian government's "digital economy" adviser, said "97 percent of business in Malaysia are small businesses but they control only less than 40 percent" of economic output.
Copyright Agence France-Presse, 2017